Once compressed, you cannot lift the toilet off the wax seal without damaging it. I suggest you remove the toilet, clean off all the old wax and then set the toilet over the flange (without a wax seal) to see how much, or why, it rocks. Be sure the flange is at least level with the floor or sitting on the flooring material, and secured to the subfloor. Plastic shims are available to reduce rocking, but if the floor is too out of level, it will never look right.
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